PyG (PyTorch Geometric)

ProteinMPNN — deep learning-based protein sequence design from backbone structures. Uses message passing neural networks to predict amino acid sequences that fold into a given 3D backbone. Supports fi

3 shared topics • 1 shared operation

AntiFold — antibody-specific inverse folding model built on ESM-IF1, fine-tuned on antibody structures from SAbDab and OAS databases. Predicts residue log-likelihoods for antibody variable domains (IM

2 shared topics • 2 shared operations

BERN2 (Biomedical Entity Recognition and Normalization 2) is a biomedical NLP tool for named entity recognition and normalization in free text and PubMed abstracts. Identifies and normalizes genes, di

2 shared topics • 2 shared operations

BioGPT — domain-specific generative pre-trained transformer for biomedical text mining and generation, pre-trained on 15M+ PubMed abstracts. Supports biomedical text generation, relation extraction, q

2 shared topics • 2 shared operations

ClimaX — Vision Transformer foundation model for weather and climate science from Microsoft Research. Pretrained on CMIP6 via self-supervised learning, then fine-tuned for global forecasting (ERA5), r

2 shared topics • 2 shared operations