PubAnnotation

AntiFold — antibody-specific inverse folding model built on ESM-IF1, fine-tuned on antibody structures from SAbDab and OAS databases. Predicts residue log-likelihoods for antibody variable domains (IM

3 shared topics • 1 shared operation

BERN2 (Biomedical Entity Recognition and Normalization 2) is a biomedical NLP tool for named entity recognition and normalization in free text and PubMed abstracts. Identifies and normalizes genes, di

3 shared topics • 1 shared operation

BioGPT — domain-specific generative pre-trained transformer for biomedical text mining and generation, pre-trained on 15M+ PubMed abstracts. Supports biomedical text generation, relation extraction, q

3 shared topics • 1 shared operation

ClimaX — Vision Transformer foundation model for weather and climate science from Microsoft Research. Pretrained on CMIP6 via self-supervised learning, then fine-tuned for global forecasting (ERA5), r

3 shared topics • 1 shared operation

OGER (OntoGene Entity Recogniser) — dictionary-based biomedical named entity recognition (NER) tool that annotates text using ontology resources including UniProt, MeSH, CTD, CRAFT, and ChEBI. Accepts

3 shared topics • 1 shared operation