Prodigal

ANNOVAR — efficient Perl-based tool for functional annotation of genetic variants from diverse genomes. Supports gene-based, region-based, and filter-based annotation using 100+ databases including Cl

2 shared topics • 1 shared operation

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Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem

2 shared topics • 1 shared operation

gffread -- GFF/GTF utility for filtering, converting, and extracting sequences from genome annotation files. Converts between GFF3 and GTF formats, extracts transcript (FASTA) and protein sequences fr

2 shared topics • 1 shared operation

Pyrodigal is a Python library binding to Prodigal for gene prediction in prokaryotic genomes and metagenomes. Provides in-memory ORF finding with SIMD-accelerated scoring, single-genome and metagenomi

2 shared topics • 1 shared operation