Preseq

NanoPlot — visualization and quality-control tool for Oxford Nanopore long-read sequencing data. Generates read length histograms, quality distribution plots, cumulative yield curves, and alignment id

2 shared topics • 1 shared operation

NanoStat — Python tool for calculating statistics from Oxford Nanopore and PacBio long-read sequencing data. Reads FASTQ, FASTA, BAM, and sequencing summary files to produce read length distributions,

2 shared topics • 1 shared operation

PRINSEQ++ — high-performance C++ tool for quality control and preprocessing of FASTQ sequencing reads. Filters and trims reads by quality score, length, GC content, sequence complexity (DUST/entropy),

2 shared topics • 1 shared operation

PycoQC — Python tool for Oxford Nanopore sequencing QC that parses basecaller summary files (sequencing_summary.txt from Guppy, Dorado, or MinKNOW) and BAM alignment files to generate interactive HTML

2 shared topics • 1 shared operation

SOAPnuke — C++ quality control and preprocessing tool for high-throughput sequencing data. Filters and trims paired-end or single-end FASTQ reads by adapter content, low quality bases, N-base ratio, r

2 shared topics • 1 shared operation