PPanGGOLiN

GTFtools — Python command-line toolkit for parsing, analyzing, and converting GTF/GFF gene annotation files. Extracts gene, transcript, and exon features; computes transcript lengths, exon counts, and

2 shared topics • 1 shared operation

IsoformSwitchAnalyzeR — R/Bioconductor package for detecting, annotating, and visualizing isoform switches with functional consequences from RNA-seq data. Integrates with Salmon, kallisto, StringTie,

2 shared topics • 1 shared operation

Roary — rapid large-scale prokaryotic pan genome analysis. Calculates the pan genome from annotated assemblies (GFF3 from Prokka/Bakta), producing core and accessory gene clusters, gene presence/absen

2 shared topics • 1 shared operation

scikit-allel — Python package for exploratory analysis of large-scale genetic variation data. Provides data structures for genotypes, haplotypes, and allele counts (GenotypeArray, HaplotypeArray, Alle

2 shared topics • 1 shared operation

Analyze genetic variants associated with athletic performance, exercise response, injury risk, and trainability. Covers GWAS, polygenic score construction, VO2max heritability, muscle fiber compositio

2 shared topics • 1 shared operation