OpenWetWare

Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv

1 shared topic • 2 shared operations

Docker — container platform for building, running, and distributing reproducible bioinformatics environments. Provides Dockerfile authoring, image management, container execution with volume mounts fo

1 shared topic • 2 shared operations

GEOfetch — Python tool for downloading and converting GEO and SRA metadata and data into PEP (Portable Encapsulations of Projects) format. Fetches sample metadata from NCBI GEO/SRA, builds standardize

1 shared topic • 2 shared operations

Latch SDK — Python-native bioinformatics workflow platform for registering, executing, and sharing reproducible workflows on cloud infrastructure. Define workflows with @workflow and @task decorators,

1 shared topic • 2 shared operations

Poetry is the Python dependency management and packaging tool for creating reproducible projects with pyproject.toml and poetry.lock. Use this skill for dependency resolution, virtual environment isol

1 shared topic • 2 shared operations