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ngs.plot — fast R-based visualization tool for next-generation sequencing data enrichment at functional genomic regions. Generates average profiles and heatmaps from BAM files over TSS, TES, gene bodi
Use with AI
Install the MCP server or CLI to instantly fetch ngs.plot documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/ngsplot
HOMER (Hypergeometric Optimization of Motif EnRichment) — a comprehensive suite of tools for motif discovery and next-generation sequencing analysis. HOMER performs de novo motif finding optimized for
3 shared topics • 1 shared operation
Use when working with Gviz, the Bioconductor R package for plotting genomic coordinates, annotations, signal tracks, read alignments, and sequence context in genome-browser-style figures. Covers core
2 shared topics • 2 shared operations
GenomicRanges — Bioconductor R package for representing, manipulating, and analyzing genomic intervals (GRanges, GRangesList). Provides operations for finding overlaps (findOverlaps, subsetByOverlaps)
2 shared topics • 1 shared operation
Use when working with pybedtools — pybedtools — Python interface to BEDTools
2 shared topics • 1 shared operation
pygenometracks -- Python program and library for plotting publication-quality genome browser tracks. Generates highly customizable visualizations of bigwig, BED, GTF, bedgraph, Hi-C matrices, links/ar
2 shared topics • 1 shared operation