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Use when working with nf-core/rnafusion — a reproducible Nextflow DSL2 pipeline for RNA fusion gene detection from RNA-seq data. Detects gene fusions using multiple callers: STAR-Fusion, Arriba, Fusio
Use with AI
Install the MCP server or CLI to instantly fetch nf-core/rnafusion documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/nf-corernafusion
Computational tools and workflows for regenerative medicine research: stem cell differentiation trajectory analysis, iPSC quality control, cell therapy manufacturing analytics, organoid single-cell pr
2 shared topics • 1 shared operation
scanpy-plots — visualization layer of the Scanpy single-cell RNA-seq analysis suite (scanpy.pl module). Generates UMAP, t-SNE, PCA embeddings, violin plots, dot plots, heatmaps, matrix plots, stacked
2 shared topics • 1 shared operation
scverse — the community-maintained Python ecosystem for single-cell and spatial omics analysis. Coordinates AnnData (universal data structure), scanpy (scRNA-seq QC/clustering/DE), squidpy (spatial tr
2 shared topics • 1 shared operation
Seurat — comprehensive R toolkit for single-cell genomics enabling QC, normalization (LogNormalize, SCTransform), feature selection, dimensionality reduction (PCA, UMAP, t-SNE), graph-based clustering
2 shared topics • 1 shared operation
t-SNE (t-distributed Stochastic Neighbor Embedding) for nonlinear dimensionality reduction and visualization of high-dimensional data. Covers Barnes-Hut and exact modes, FIt-SNE/openTSNE interpolation
2 shared topics