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NEB Tools is a suite of free online tools from New England Biolabs (NEB) for primer design, restriction enzyme selection, cloning strategy planning, and molecular biology workflow design. Key tools in
Use with AI
Install the MCP server or CLI to instantly fetch NEB Tools documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/neb-tools
Use this skill for Eugene, the rule-based language and software framework for specifying and constraining synthetic biological parts, devices, and systems. Covers Eugene language syntax (Part, Device,
2 shared topics • 1 shared operation
medaka -- neural network-based tool from Oxford Nanopore Technologies for creating consensus sequences and calling variants from nanopore sequencing data. Polishes draft assemblies from Flye, miniasm,
2 shared topics • 1 shared operation
BAGEL2 — Bayesian Analysis of Gene Essentiality v2 for identifying essential genes from CRISPR/Cas9 knockout screens. Calculates Bayes Factors from fold-change distributions using reference sets of co
2 shared topics
MAGeCK-VISPR — comprehensive CRISPR screen analysis framework combining MAGeCK statistical testing (RRA and MLE algorithms) with VISPR interactive visualization. Supports sgRNA count generation from F
2 shared topics
Use when working with OBO Foundry ontologies or the OBO tooling ecosystem: pronto (Python OBO/OWL parser), ROBOT (Java CLI for ontology operations), oaklib/OAK (Ontology Access Kit), or fastobo. Cover
2 shared topics