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Use when working with napari-spatialdata, the scverse napari plugin for interactive exploration and annotation of SpatialData .zarr datasets in spatial omics workflows. Covers CLI usage (`python -m na
Use with AI
Install the MCP server or CLI to instantly fetch napari-spatialdata documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/napari-spatialdata
Use when working with cistem — cisTEM — single-particle cryo-EM data
1 shared topic • 2 shared operations
cryoSPARC — cryo-EM single particle analysis platform for high-resolution 3D structure determination. Provides motion correction, CTF estimation, particle picking (blob, template, Topaz), 2D classific
1 shared topic • 2 shared operations
Use when working with eman2 — EMAN2 — comprehensive cryo-EM image processing
1 shared topic • 2 shared operations
OMERO (Open Microscopy Environment Remote Objects) — client-server platform for managing, visualizing, and analyzing microscopy image data. Provides centralized image repository with Python API (omero
1 shared topic • 2 shared operations
RELION — Bayesian approach to cryo-EM single-particle analysis for 3D structure determination of biological macromolecules. Provides motion correction, CTF estimation, particle picking (autopicking, L
1 shared topic • 2 shared operations