NanoSV — structural variant caller for long-read sequencing data (Oxford Nanopore). Detects deletions, insertions, inversions, duplications, and translocations from split-read alignments in BAM files.
Use with AI
Install the MCP server or CLI to instantly fetch NanoSV documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/nanosv
Mashtree — rapid distance-based phylogenetic tree construction from genome assemblies using MinHash (Mash) distances. Creates neighbor-joining trees from FASTA assemblies, FASTQ reads, or GenBank file
1 shared topic • 3 shared operations
SVIM — structural variant identification from long-read sequencing data (PacBio, Oxford Nanopore). Detects deletions, insertions, tandem and interspersed duplications, inversions, and translocations f
1 shared topic • 3 shared operations
VSEARCH — open-source, multithreaded alternative to USEARCH for amplicon and metagenomics sequence analysis. Performs dereplication, chimera detection (de novo and reference-based), OTU/ASV clustering
1 shared topic • 3 shared operations
DADA2 — high-resolution amplicon sequence variant (ASV) inference from Illumina, 454, and Ion Torrent amplicon sequencing data. R/Bioconductor package that models sequencing errors to resolve exact bi
1 shared topic • 2 shared operations
Tools for manipulating next-generation sequencing data stored in SAM/BAM/CRAM format, including sorting, indexing, and format conversion.
1 shared topic • 2 shared operations