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Use when working with MRInstruments — an R package for retrieving and curating genetic instrument variables for Mendelian randomization (MR) analyses. Provides access to GWAS summary statistics, clump
Use with AI
Install the MCP server or CLI to instantly fetch MRInstruments documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/mrinstruments
GREML (GCTA) — genome-based restricted maximum likelihood analysis for SNP heritability estimation, genetic correlation, mixed linear model association (MLMA), and COJO conditional analysis. Use when
2 shared topics • 1 shared operation
Gubbins — rapid phylogenetic analysis of recombinant bacterial whole genome sequences. Iteratively detects recombination hotspots with elevated SNP density while constructing clonal frame phylogenies.
2 shared topics • 1 shared operation
GWAS Catalog tools (gwas-sumstats-tools) are EMBL-EBI utilities for reading, writing, validating, and formatting genome-wide association study (GWAS) summary statistics in the GWAS-SSF standard format
2 shared topics • 1 shared operation
RTG Tools — Java-based toolkit from Real Time Genomics for haplotype-aware variant call comparison, VCF filtering, statistics, and pedigree analysis. Primary use: vcfeval for benchmarking variant call
2 shared topics • 1 shared operation
snpStats is an R/Bioconductor package for GWAS (genome-wide association study) and population genetics analysis. It provides SnpMatrix and XSnpMatrix objects for efficient SNP data storage, PLINK bina
2 shared topics • 1 shared operation