mosdepth

blue-crab converts Oxford Nanopore Technology (ONT) sequencing data between POD5 and SLOW5/BLOW5 file formats. Use for long-read genomics workflows that require SLOW5/BLOW5 input (e.g., Buttery-eel ba

2 shared topics • 2 shared operations

medaka -- neural network-based tool from Oxford Nanopore Technologies for creating consensus sequences and calling variants from nanopore sequencing data. Polishes draft assemblies from Flye, miniasm,

2 shared topics • 2 shared operations

Sarek — nf-core Nextflow pipeline for germline and somatic variant calling from whole-genome sequencing (WGS), whole-exome sequencing (WES), and targeted sequencing data. Supports multiple variant cal

2 shared topics • 2 shared operations

sigmap is a C++ tool for signal-level alignment of nanopore sequencing data, mapping raw electrical signals (squiggles) directly to a reference genome without basecalling. Uses Dynamic Time Warping (D

2 shared topics • 2 shared operations

SvABA -- structural variant and indel caller using genome-wide local assembly. Detects deletions, insertions, duplications, inversions, and complex rearrangements from short-read (Illumina) whole-geno

2 shared topics • 2 shared operations