Miniasm

Canu — long-read de novo genome assembler for PacBio HiFi, PacBio CLR, and Oxford Nanopore reads. Performs read correction, trimming, and overlap-layout-consensus assembly in three stages. Supports di

1 shared topic • 1 shared operation

NanoPlot — visualization and quality-control tool for Oxford Nanopore long-read sequencing data. Generates read length histograms, quality distribution plots, cumulative yield curves, and alignment id

1 shared topic • 1 shared operation

NextDenovo — string graph-based de novo assembler for long reads. Performs error correction (NextCorrect) then assembly (NextGraph) from PacBio CLR, PacBio HiFi, or Oxford Nanopore reads. Config-file

1 shared topic • 1 shared operation

ShortBRED — metagenomics protein-family quantification tool from the bioBakery suite. Identifies short, representative peptide markers from protein families and quantifies their relative abundance in

1 shared topic • 1 shared operation

SvABA -- structural variant and indel caller using genome-wide local assembly. Detects deletions, insertions, duplications, inversions, and complex rearrangements from short-read (Illumina) whole-geno

1 shared topic • 1 shared operation