LinusFold

BioPython.PDB -- Python module for structural biology and macromolecular structure analysis. Parses PDB and mmCIF files, navigates the Structure-Model-Chain-Residue-Atom (SMCRA) hierarchy, computes at

2 shared topics • 1 shared operation

Use when working with OmegaFold to predict 3D protein structures from amino acid sequences without multiple sequence alignments (MSA-free). Covers single-sequence structure prediction, batch FASTA pro

2 shared topics • 1 shared operation

PyMOL — molecular visualization system for rendering publication-quality 3D images of protein structures, nucleic acids, small molecules, electron density maps, and volumetric data. Provides interacti

2 shared topics

Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.

1 shared topic • 1 shared operation

DiffDock — diffusion generative model for molecular docking that predicts protein-ligand binding poses. Uses a diffusion process over translations, rotations, and torsion angles to generate and rank d

1 shared topic • 1 shared operation