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Use when performing comparative genomics synteny analysis with JCVI/MCscan, the Python toolkit for detecting and visualizing collinear gene blocks between plant or fungal genomes. Covers ortholog iden
Use with AI
Install the MCP server or CLI to instantly fetch JCVI/MCscan documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/jcvimcscan
Dash Bio -- interactive bioinformatics visualization components built on Plotly Dash. Provides domain-specific charts including Circos plots, ideograms, needle plots (lollipop/mutation diagrams), alig
1 shared topic • 2 shared operations
Harvest Tools — core genome phylogenomics suite for rapid whole-genome alignment, SNP extraction, and phylogenetic tree inference from closely related microbial genomes. Parsnp performs MUMmer-based c
1 shared topic • 2 shared operations
IGV (Integrative Genomics Viewer) — high-performance Java desktop application for interactive visualization and exploration of genomic data. Supports BAM/CRAM alignments, VCF variants, BED/GFF annotat
1 shared topic • 2 shared operations
MaizeGDB (Maize Genetics and Genomics Database) — the community database for maize (Zea mays) genetics and genomics. Query gene models, loci, QTLs, traits, germplasm, and metabolites via the MaizeGDB
1 shared topic • 2 shared operations
NCBI Genome Workbench — desktop application for integrated genomic data visualization, sequence analysis, and annotation. Supports interactive browsing of GenBank/RefSeq entries, multiple sequence ali
1 shared topic • 2 shared operations