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FMLRC2 — FM-index Long Read Corrector version 2, a Rust-based hybrid error correction tool for long reads (PacBio CLR, Oxford Nanopore) using Illumina short reads as a correction guide. Builds a compr
Use with AI
Install the MCP server or CLI to instantly fetch FMLRC2 documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/fmlrc2
GATK4 — Genome Analysis Toolkit for germline and somatic short variant discovery (SNPs and indels). Industry-standard caller providing HaplotypeCaller for germline, Mutect2 for somatic, plus Base Qual
2 shared topics • 2 shared operations
Getz Lab tools (ABSOLUTE, MuTect/MuTect2) from the Broad Institute for cancer genomics. ABSOLUTE infers tumor purity, ploidy, and absolute copy numbers from segmented copy number data. MuTect2 (GATK4)
2 shared topics • 2 shared operations
ipyrad is a Python toolkit for de novo and reference-guided assembly and genotyping of RADseq, GBS, ddRAD, 2bRAD, and other restriction enzyme-based reduced representation genomic datasets. Implements
2 shared topics • 2 shared operations
medaka -- neural network-based tool from Oxford Nanopore Technologies for creating consensus sequences and calling variants from nanopore sequencing data. Polishes draft assemblies from Flye, miniasm,
2 shared topics • 2 shared operations
SvABA -- structural variant and indel caller using genome-wide local assembly. Detects deletions, insertions, duplications, inversions, and complex rearrangements from short-read (Illumina) whole-geno
2 shared topics • 2 shared operations