Loading homepage
Use when working with EvoAug -- a PyTorch library for evolution-inspired data augmentation of DNA sequences for training genomic deep learning models. EvoAug applies biologically motivated transforms:
Use with AI
Install the MCP server or CLI to instantly fetch EvoAug documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/evoaug
BEAST2 — Bayesian Evolutionary Analysis by Sampling Trees. Cross-platform Java application for Bayesian phylogenetic inference using MCMC sampling. Use when estimating time-calibrated phylogenies, rel
2 shared topics • 1 shared operation
ClonalFrameML detects recombination (horizontal gene transfer) in bacterial whole-genome alignments using maximum likelihood inference. It takes a Newick phylogenetic tree and FASTA/XMFA alignment, th
2 shared topics • 1 shared operation
Evo — genomic foundation model for DNA sequence modeling at single-nucleotide resolution. Uses StripedHyena architecture (7B parameters) trained on 2.7M prokaryotic and phage genomes (OpenGenome datas
2 shared topics • 1 shared operation
OrthoFinder — fast, accurate ortholog inference for comparative genomics. Identifies orthogroups, orthologs, gene trees, rooted species trees, and gene duplication events from protein or nucleotide se
2 shared topics • 1 shared operation
TASSEL (Trait Analysis by aSSociation, Evolution, and Linkage) is a Java-based software package for genome-wide association studies (GWAS), population genetics, and linkage disequilibrium analysis. Su
2 shared topics • 1 shared operation