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EpiEstim — CRAN R package from the MRC Centre for Global Infectious Disease Analysis for estimating the time-varying (instantaneous) reproduction number R_t from epidemic incidence time series. Implem
Use with AI
Install the MCP server or CLI to instantly fetch Epiestim documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/epiestim
Microreact — web-based visualization platform for genomic epidemiology that combines interactive phylogenetic trees, geographic maps, and timelines with metadata tables synchronized through client-sid
2 shared topics • 1 shared operation
Use when working with Convex.jl — a Julia package for Disciplined Convex Programming (DCP) that formulates and solves convex optimization problems with natural mathematical syntax. Covers problem cons
2 shared operations
COPASI — COmplex PAthway SImulator for systems biology. Simulates and analyzes biochemical reaction networks using deterministic ODE integration (LSODA, Radau5, CVODE), stochastic simulation (Gibson-B
2 shared operations
Hmsc (Hierarchical Modelling of Species Communities) is an R package for fitting joint species distribution models (JSDMs) in a Bayesian hierarchical framework. It links species occurrences or abundan
2 shared operations
MaAsLin 2 (Microbiome Multivariable Association with Linear Models 2) is the bioBakery tool for finding associations between microbial features (taxa, functional pathways, gene families) and sample me
2 shared operations