eDNAFlow

AGAT (Another Gff Analysis Toolkit) — comprehensive Perl toolkit for reading, writing, validating, fixing, and manipulating genome annotation files in GFF3, GTF, and GFF2 formats. Converts between for

1 shared topic • 2 shared operations

Fastq Screen — Perl tool for screening FASTQ sequencing reads against multiple reference genomes to detect sample contamination. Maps reads to user-defined genome databases (human, mouse, E. coli, Phi

1 shared topic • 2 shared operations

gnomAD methods — Broad Institute Python library for working with gnomAD (Genome Aggregation Database) data using Hail. Provides population genetics analysis including variant filtering with VQSR and r

1 shared topic • 2 shared operations

PLINK 1.9/2 — high-performance command-line toolset for whole-genome association analysis, population stratification, identity-by-descent, linkage disequilibrium computation, and genotype data managem

1 shared topic • 2 shared operations

VCFtools — C++ toolkit for filtering, comparing, summarizing, converting, and manipulating VCF (Variant Call Format) and BCF files. Provides site and individual-level filtering, allele frequency calcu

1 shared topic • 2 shared operations