EDAM Ontology Explorer

CrossMap is a Python tool for genome coordinate liftover — converting genomic positions between different genome assemblies (e.g., hg19 to hg38, GRCh37 to GRCh38, mm9 to mm10). Supports BED, BAM/SAM/C

1 shared topic • 3 shared operations

BioPython.PDB -- Python module for structural biology and macromolecular structure analysis. Parses PDB and mmCIF files, navigates the Structure-Model-Chain-Residue-Atom (SMCRA) hierarchy, computes at

1 shared topic • 2 shared operations

dnaPipeTE (do not assemble - PipelinE for Transposable Elements) is a bioinformatics pipeline for estimating the proportion and landscape of transposable elements (TEs) and other repeats in a genome f

1 shared topic • 2 shared operations

g:Profiler — multi-organism functional enrichment analysis and gene identifier mapping toolkit. Performs over-representation analysis (ORA) against Gene Ontology (GO:BP, GO:MF, GO:CC), KEGG, Reactome,

1 shared topic • 2 shared operations

SOAPdenovo2 — de novo short-read genome assembler for large plant and animal genomes using de Bruijn graph construction. Runs a four-stage pipeline: pregraph (k-mer graph), contig (initial contigs), m

1 shared topic • 2 shared operations