ChIPseeker

Bowtie2 — ultrafast and memory-efficient short-read aligner using FM-index with gapped alignment and local alignment modes. Standard aligner for ChIP-seq, ATAC-seq, CUT&RUN, CUT&Tag, and general short

1 shared topic • 1 shared operation

MACS2/MACS3 — Model-based Analysis of ChIP-Seq for identifying transcription factor binding sites and histone modification enrichment from ChIP-seq, ATAC-seq, and CUT&Tag data. Provides peak calling (

1 shared topic • 1 shared operation

pygenometracks -- Python program and library for plotting publication-quality genome browser tracks. Generates highly customizable visualizations of bigwig, BED, GTF, bedgraph, Hi-C matrices, links/ar

1 shared topic • 1 shared operation

Sentinel Hub is a cloud-based satellite imagery access and processing platform that provides programmatic access to Copernicus Sentinel, Landsat, MODIS, and commercial satellite data collections throu

1 shared topic • 1 shared operation

WiggleTools — command-line toolkit for streaming arithmetic and set operations on genomic signal tracks stored in Wiggle, BigWig, BedGraph, and BAM/CRAM formats. Computes sums, means, products, log tr

1 shared topic • 1 shared operation