HUMAnN

humann3 – The Huttenhower Lab Home About us Teaching Tools People Join our Team Contact Us Software Support humann3 The Huttenhower Lab > humann3 HUMAnN 3.0 HUMAnN 3.0 is the next iteration of HUMAnN, the HMP Unified Metabolic Analysis Network. HUMAnN is a method for efficiently and accurately profiling the abundance of microbial metabolic pathways and other molecular functions from metagenomic or metatranscriptomic sequencing data.

For more information please see: User manual || Tutorial || Forum Citation: Francesco Beghini 1 ,Lauren J McIver 2 ,Aitor Blanco-Mìguez 1 , Leonard Dubois 1 , Francesco Asnicar 1 ,Sagun Maharjan 2,3 ,Ana Mailyan 2,3 , Andrew Maltez Thomas 1 , Paolo Manghi 1 , Mireia Valles-Colomer 1 ,George Weingart 2,3 ,Yancong Zhang 2,3 , Moreno Zolfo 1 ,Curtis Huttenhower 2,3 ,Eric A Franzosa 2,3 , Nicola Segata 1,4 Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities

H. Chan School of Public Health, Boston, MA, USA 3 The Broad Institute of MIT and Harvard, Cambridge, MA, USA 4 IEO, European Institute of Oncology IRCCS, Milan, Italy Major updates in HUMAnN 3.0 Designed in tandem with MetaPhlAn 3.0. Based on UniProt/UniRef 2019_01 sequences and annotations. Contains 2x more species pangenomes and 3x more gene families (vs. HUMAnN 2.0). Incorporates MetaCyc v24.0 pathway definitions. Removed version number from executables (call metaphlan and humann ).