Giotto
bio.tools10 docs · 993 tokensGiotto is a toolbox for integrative analysis and visualization of spatial expression data.
Use with Claude
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MCP call
resolve-library-id("giotto")Or share this page: biocontext7.com/tools/bio.tools/giotto
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Topics
Documentation Snippets
993 tokens · 10 snippetsSpatial Single-Cell Transcriptomics Toolbox • Giotto Toggle navigation Giotto 1.1.2 Start Description Workflow HOWTOs Documentation Datasets mini seqFISH mini visium (spots) mini 3D STARmap mouse seqFISH cortex mouse hypoth. preopt.
region mouse STARmap cortex human CyCIF PDAC mouse Visium brain mouse Visium kidney mouse CODEX spleen mouse osmFISH SScortex Contribute FAQ Frequently Asked Questions GitHub Issues Guidelines News Try Giotto Docker Binder OLD Giotto website Please use the new website www.giottosuite.com . This website is outdated and archived for consistency with the original Giotto publication (Dries et al, Genome Biology, 2021).
The Giotto package consists of two modules, Giotto Analyzer and Viewer (see www.spatialgiotto.com ), which provide tools to process, analyze and visualize single-cell spatial expression data. The underlying framework is generalizable to virtually all currently available spatial datasets.
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Installation
conda install -c bioconda giottoVersion History
- vlatest