ANTs (Advanced Normalization Tools)

Use when performing neuroimaging analysis in Python with ANTsPy (antspyx). Covers Python-native image registration with ants.registration(), bias field correction with ants.n4_bias_field_correction(),

1 shared topic • 2 shared operations

DoE.base is a foundational R package by Ulrike Groemping for full factorial experimental designs and designs based on orthogonal arrays. It provides utility functions for the shared `design` class use

1 shared topic • 1 shared operation

Hmsc (Hierarchical Modelling of Species Communities) is an R package for fitting joint species distribution models (JSDMs) in a Bayesian hierarchical framework. It links species occurrences or abundan

1 shared topic • 1 shared operation

PyDESeq2 — Python implementation of DESeq2 for differential gene expression analysis from bulk RNA-seq count data. Performs size factor normalization, genewise dispersion estimation, Wald tests with B

1 shared topic • 1 shared operation

QuPath — open-source platform for whole slide image analysis and digital pathology. Provides interactive tools for tissue detection via thresholding, cell detection and positive cell classification (H

1 shared topic • 1 shared operation