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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 1646 |
| hapROH |
| Genomics |
| Genomics |
| 24.3 |
| +3% |
| 442 | Harmony -- Single-Cell Data Integration | Single-Cell | Single-Cell | 35.86 | +8% |
| 229 | Harvest Tools | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 1292 | HDBSCAN | Statistics | Statistics | 26.7 | +3% |
| 1293 | HDF5Array | Utilities & Infrastructure | Utilities & Infrastructure | 26.7 | +3% |
| 72 | HDMT | Statistics | Statistics | 45.1 | +8% |
| 1294 | Hecatomb | Metagenomics | Metagenomics | 26.7 | +3% |
| 1295 | Helixer | Other | Other | 26.7 | +3% |