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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1593 | CDO (Climate Data Operators) | Other | Other | 24.3 | +3% |
| 94 | Cell Ranger | Single-Cell | Single-Cell | 42.94 | +8% |
Data as of: Apr 12, 2026
| 491 |
| Cell Ranger ATAC |
| Genomics |
| Genomics |
| 35.8 |
| +8% |
| 427 | cell2location | Transcriptomics | Transcriptomics | 35.92 | +8% |
| 1594 | CellBender | Single-Cell | Single-Cell | 24.3 | +3% |
| 610 | CellChat | Single-Cell | Single-Cell | 35.74 | +8% |
| 1166 | CellGenIT Tools | Utilities & Infrastructure | Utilities & Infrastructure | 26.7 | +3% |
| 1860 | CellML | Systems Biology | Systems Biology | 21.84 | +3% |
| 1595 | CellNOptR | Systems Biology | Systems Biology | 24.3 | +3% |
| 1861 | Cello 2.0 | Systems Biology | Systems Biology | 21.84 | +3% |