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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 339 | scib -- Single-Cell Integration Benchmarking | Single-Cell | Single-Cell | 38.74 | +8% |
| 1744 | scib-metrics | Single-Cell | Single-Cell | 24.3 | +3% |
Data as of: Apr 12, 2026
| 68 | scikit-allel | Metagenomics | Metagenomics | 45.52 | +8% |
| 701 | scikit-image | Imaging | Imaging | 35.74 | +8% |
| 1443 | scikit-learn | Machine Learning | Machine Learning | 26.7 | +3% |
| 1948 | scikit-survival | Utilities & Infrastructure | Utilities & Infrastructure | 21.84 | +3% |
| 1444 | scimap | Imaging | Imaging | 26.7 | +3% |
| 702 | sciPENN | Systems Biology | Systems Biology | 35.74 | +8% |
| 280 | SciPy | Utilities & Infrastructure | Utilities & Infrastructure | 38.8 | +8% |
| 738 | scipyoptimize | Statistics | Statistics | 30.18 | +3% |