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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 462 | Salmon / Alevin | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 279 | SALSA2 | Genomics | Genomics | 38.8 | +8% |
| 1433 | SAMap | Single-Cell | Single-Cell | 26.7 | +3% |
| 173 | Sambamba | Genomics | Genomics | 38.86 | +8% |
| 818 | Sambamba mkdup | Utilities & Infrastructure | Utilities & Infrastructure | 29.7 | +3% |
| 1741 | samblaster | Utilities & Infrastructure | Utilities & Infrastructure | 24.3 | +3% |
| 1434 | Samplesize | Statistics | Statistics | 26.7 | +3% |
| 2 | SAMtools | Genomics | Genomics | 68.86 | +15% |