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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 1726 |
| PySB |
| Systems Biology |
| Systems Biology |
| 24.3 |
| +3% |
| 1931 | pySBOL3 | Systems Biology | Systems Biology | 21.84 | +3% |
| 688 | pySCENIC | Single-Cell | Single-Cell | 35.74 | +8% |
| 1727 | pysheds | Other | Other | 24.3 | +3% |
| 458 | Pystac | Other | Other | 35.86 | +8% |
| 831 | PyStan | Statistics | Statistics | 29.64 | +3% |
| 955 | pyteomics -- Proteomics and Mass Spectrometry Data Analysis | Proteomics | Proteomics | 29.34 | +3% |
| 1932 | pytest | Workflows | Workflows | 21.84 | +3% |