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Top bioinformatics tools ranked by usage across 144 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 38 | Salmon / Alevin | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 39 | scater | Transcriptomics | Transcriptomics | 35.86 |
Data as of: Apr 12, 2026
| 40 | SPOTlight | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 41 | sva | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 30 | cell2location | Transcriptomics | Transcriptomics | 35.92 | +8% |
| 29 | Corset | Transcriptomics | Transcriptomics | 36.4 | +8% |
| 26 | BBKNN -- Batch Balanced K Nearest Neighbours | Transcriptomics | Transcriptomics | 38.74 | +8% |
| 27 | EAGLE | Transcriptomics | Transcriptomics | 38.74 | +8% |
| 28 | GATK4 (Genome Analysis Toolkit) | Transcriptomics | Transcriptomics | 38.74 | +8% |
| 20 | alevin-fry | Transcriptomics | Transcriptomics | 38.8 | +8% |