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Top bioinformatics tools ranked by usage across 144 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 139 | scran -- Single-Cell RNA-Seq Normalization and Analysis | Transcriptomics | Transcriptomics | 22.8 | +3% |
| 16 | sleuth | Transcriptomics | Transcriptomics | 38.86 |
Data as of: Apr 12, 2026
| 51 | Slingshot | Transcriptomics | Transcriptomics | 35.8 | +8% |
| 119 | spacexr (RCTD) | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 40 | SPOTlight | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 10 | Sqanti3 | Transcriptomics | Transcriptomics | 40.54 | +8% |
| 122 | stageR | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 2 | STAR | Transcriptomics | Transcriptomics | 67.48 | +15% |
| 17 | STAR-Fusion | Transcriptomics | Transcriptomics | 38.86 | +8% |
| 87 | STARRPeaker | Transcriptomics | Transcriptomics | 27.3 | +3% |