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Top bioinformatics tools ranked by usage across 104 tools.
Data as of: Apr 12, 2026
| 103 | Scfates | Single-Cell | Single-Cell | 21.84 | +3% |
| 101 | openCyto | Single-Cell | Single-Cell | 21.9 | +3% |
| 99 | BayesSpace | Single-Cell | Single-Cell | 22.68 | +3% |
| 100 | SPARK | Single-Cell | Single-Cell | 22.68 | +3% |
| 98 | scvi-tools | Single-Cell | Single-Cell | 24.18 | 0% |
| 88 | BPCells | Single-Cell | Single-Cell | 24.3 | +3% |
| 89 | CATALYST | Single-Cell | Single-Cell | 24.3 | +3% |
| 90 | CellBender | Single-Cell | Single-Cell | 24.3 | +3% |