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Top bioinformatics tools ranked by usage across 104 tools.
Data as of: Apr 12, 2026
| 76 | scHPF | Single-Cell | Single-Cell | 26.7 | +3% |
| 12 | scib -- Single-Cell Integration Benchmarking | Single-Cell | Single-Cell | 38.74 | +8% |
| 96 | scib-metrics | Single-Cell | Single-Cell | 24.3 | +3% |
| 48 | SCRAN.pool | Single-Cell | Single-Cell | 35.74 | +8% |
| 57 | Scrublet | Single-Cell | Single-Cell | 28.86 | +3% |
| 77 | SCTransform | Single-Cell | Single-Cell | 26.7 | +3% |
| 22 | scVelo | Single-Cell | Single-Cell | 35.86 | +8% |
| 78 | scverse | Single-Cell | Single-Cell | 26.7 | +3% |