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Top bioinformatics tools ranked by usage across 104 tools.
Data as of: Apr 12, 2026
| 46 | SAIGE-QTL | Single-Cell | Single-Cell | 35.74 | +8% |
| 74 | SAMap | Single-Cell | Single-Cell | 26.7 | +3% |
| 2 | Scanpy | Single-Cell | Single-Cell | 44.92 | +8% |
| 31 | scArches | Single-Cell | Single-Cell | 35.8 | +8% |
| 32 | scCODA | Single-Cell | Single-Cell | 35.8 | +8% |
| 21 | scDblFinder | Single-Cell | Single-Cell | 35.86 | +8% |
| 75 | scde | Single-Cell | Single-Cell | 26.7 | +3% |
| 47 | SCENIC | Single-Cell | Single-Cell | 35.74 | +8% |