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Top bioinformatics tools ranked by usage across 52 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 22 | RAxML-NG | Phylogenetics | Phylogenetics | 36.46 | +8% |
| 21 | OrthoFinder | Phylogenetics | Phylogenetics | 36.52 |
Data as of: Apr 12, 2026
| 18 | Clustal Omega | Phylogenetics | Phylogenetics | 36.76 | +10% |
| 19 | Snippy | Phylogenetics | Phylogenetics | 36.76 | +10% |
| 20 | SNP-sites | Phylogenetics | Phylogenetics | 36.76 | +10% |
| 17 | minimap2-Based Phylogenetics | Phylogenetics | Phylogenetics | 38.74 | +8% |
| 8 | CD-HIT | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 9 | Gubbins | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 10 | Harvest Tools | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 11 | Mashtree | Phylogenetics | Phylogenetics | 38.8 | +8% |